When you want to get to know and love your data

Posts tagged “metabolomics

Rise of Deep Learning for Genomic, Proteomic, and Metabolomic Data Integration in Precision Medicine

Full manuscript:

https://www.liebertpub.com/doi/10.1089/omi.2018.0097

Advertisements

Complex Systems Biology Informed Data Analysis

materials_of_analysisMetabolomics and the greater sphere of ‘Omic analyses are a burgeoning set tools for investigation of environmental and organismal mechanisms and interactions. Carrying out data analyses within complex biological system contexts is rewarding but also difficult. The following presentation considers components involved in conducting multivariate data analysis, modeling and visualization within biological contexts.

slides: https://www.slideshare.net/dgrapov/complex-systems-biology-informed-data-analysis-and-machine-learning


Image

Data Analysis Workflow: ‘Omics style

Follow along with the presentation and recreate all the analysis results for yourself.

Clipboard01


Metabolomics and Beyond: Challenges and Strategies for Next-gen Omic Analyses

Clipboard01
Recently I had the pleasure of giving lecture for the Metabolomics Society on Challenges and Strategies for Next-gen Omic Analyses. You can check out all of my slides and video of the lecture below.


Omic data integration strategies


Check out the full article pre-print version.

header figure

 


Mapping to the MetabolOMIC Manifold


I recently had the pleasure of giving a presentation on one of my favorite topics, network mapping, and its application to metabolomic and genomic data integration. You can check out the full presentation below.


2014 Metabolomic Data Analysis and Visualization Workshop and Tutorials

Clipboard02
Recently I had the pleasure of teaching statistical and multivariate data analysis and visualization at the annual Summer Sessions in Metabolomics 2014, organized by the NIH West Coast Metabolomics Center.


Similar to last year, I’ve posted all the content (lectures, labs and software) for any one to follow along with at their own pace. I also plan to release videos for all the lectures and labs including use cases for the freely available data analysis software listed below.


You can check out the introduction lecture to the covered material below.



New additions to the course include lecture and lab on Data normalization and updated and improved software.


Software


Stay tuned for videos of all of the material!

Creative Commons License
2014 Metabolomics Data Analysis and Visualization Tutorials Dmitry Grapov is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.