Rise of Deep Learning for Genomic, Proteomic, and Metabolomic Data Integration in Precision Medicine
Full manuscript:
https://www.liebertpub.com/doi/10.1089/omi.2018.0097
September 2, 2018 | Categories: Uncategorized | Tags: deep learning, genomics, metabolomics, Precision Medicine, proteomics | Leave a comment
Complex Systems Biology Informed Data Analysis
Metabolomics and the greater sphere of ‘Omic analyses are a burgeoning set tools for investigation of environmental and organismal mechanisms and interactions. Carrying out data analyses within complex biological system contexts is rewarding but also difficult. The following presentation considers components involved in conducting multivariate data analysis, modeling and visualization within biological contexts.
slides: https://www.slideshare.net/dgrapov/complex-systems-biology-informed-data-analysis-and-machine-learning
June 11, 2017 | Categories: Uncategorized | Tags: clustering, data visualization, genomics, lectures, machine learning, metabolomics, network, pathways, proteomics, research, science, software, statistical analysis | Leave a comment
Data Analysis Workflow: ‘Omics style
Follow along with the presentation and recreate all the analysis results for yourself.
October 10, 2015 | Categories: Uncategorized | Tags: integration, metabolomics, omics, r-bloggers | 2 Comments
Metabolomics and Beyond: Challenges and Strategies for Next-gen Omic Analyses
Recently I had the pleasure of giving lecture for the Metabolomics Society on Challenges and Strategies for Next-gen Omic Analyses. You can check out all of my slides and video of the lecture below.
September 19, 2015 | Categories: Uncategorized | Tags: biochemical network, chemical similarity network, data integration, dgrapov, genomics, metabolomics, proteomics, r-bloggers, west coast metabolomics center | 4 Comments
Omic data integration strategies
Check out the full article pre-print version.
August 23, 2015 | Categories: Uncategorized | Tags: data analysis, data integration, genomics, metabolomics, network, pathways, proteomics | Leave a comment
Mapping to the MetabolOMIC Manifold
I recently had the pleasure of giving a presentation on one of my favorite topics, network mapping, and its application to metabolomic and genomic data integration. You can check out the full presentation below.
November 2, 2014 | Categories: Uncategorized | Tags: biochemical network, chemical similarity network, data analysis, data visualization, DeviumWeb, genomics, metabolomics, MetaMapR, network mapping, topological data analysis | Leave a comment
2014 Metabolomic Data Analysis and Visualization Workshop and Tutorials
Recently I had the pleasure of teaching statistical and multivariate data analysis and visualization at the annual Summer Sessions in Metabolomics 2014, organized by the NIH West Coast Metabolomics Center.
Similar to last year, I’ve posted all the content (lectures, labs and software) for any one to follow along with at their own pace. I also plan to release videos for all the lectures and labs including use cases for the freely available data analysis software listed below.
You can check out the introduction lecture to the covered material below.
New additions to the course include lecture and lab on Data normalization and updated and improved software.
Software
Stay tuned for videos of all of the material!
2014 Metabolomics Data Analysis and Visualization Tutorials Dmitry Grapov is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
October 11, 2014 | Categories: Uncategorized | Tags: biochemical network, data analysis, data visualization, demo, DeviumWeb, lectures, metabolomics, MetaMapR, r-bloggers, tutorial, west coast metabolomics center, workshop | Leave a comment